Nextflow workflow report

[crazy_lichterman] (resumed run)

Workflow execution completed successfully!
Run times
24-Jun-2023 00:58:17 - 24-Jun-2023 02:20:33 (duration: 1h 22m 16s)
  1 succeeded  
  3485 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow run /czlab/xuwen/scripts/PreP-ubam2bam-BWA-variant-GATK4/processing-for-variant-discovery-gatk4MT2T.nf -profile hpc_slurm -c /czlab/xuwen/results/NA12878/300X/scripts/nextflowT2T.config -work-dir /czlab/xuwen/results/NA12878/300X/workspaces/PreP-ubam2bam-BWA-variant-GATK4/T2T/work --outdir /czlab/xuwen/results/NA12878/300X/T2ToutDir/ --unmapped_bams_list /czlab/xuwen/results/NA12878/300X/unmapped_bams/unmapped_bams.tsv --projectId NA12878 -with-report processing-for-variant-discovery-gatk4.html -with-dag processing-for-variant-discovery-gatk4.flowchart.png -with-trace trace.txt -N sherwinmabos@gmail.com -bg -resume
CPU-Hours
7'898.1 (99.7% cached)
Launch directory
/czlab/xuwen/results/NA12878/300X/scripts/T2Tu2bamrun
Work directory
/czlab/xuwen/results/NA12878/300X/workspaces/PreP-ubam2bam-BWA-variant-GATK4/T2T/work
Project directory
/czlab/xuwen/scripts/PreP-ubam2bam-BWA-variant-GATK4
Script name
processing-for-variant-discovery-gatk4MT2T.nf
Script ID
b3005fa5b592ab2641714ebf600f56e9
Workflow session
58904120-73be-4713-af13-a374f46c7a4c
Workflow profile
hpc_slurm
Nextflow version
version 21.10.6, build 5660 (21-12-2021 16:55 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)